let us dissect your question,
Two brothers own a piece of land jointly, of which one is 16 years old, both brothers execute a GPA and JDA with a builder to construct apartments, if you buy a flat in this project is it safe as it involves a minor.
At the time of purchase of land one brother was a minor rep by his guardian, whether that guardian is the other brother must be ascertained, if not then the guardian must have been his mother or father.
Next both brothers executed the GPA & JDA in favour of builder, after the minor has become a major, it is advisible to take a Deed of Confirmation from the minor, who has attained majority confirming the execution of GPA & JDA when he was a minor to over come any future problems.